W: Process PASEF-MS1 imaging data (single-dataset)
Brief description
Parse PASEF imaging data and export data.
Parameters
MS1 tag (type - string)
Tag (glob pattern) to recognize the MS1 dataset by.
MS2 tag (type - string)
Tag (glob pattern) to recognize the MS2 dataset(s) by.
Normalization tag (type - string)
Tag to use for normalization.
Help
Rather than applying a normalization to the entire dataset, we apply it as needed to each task at hand.
You can compare the effect normalization has on specific task by repeating it with different normalization.
In some cases, its advised to use 'multi-dataset' normalization, in particular when doing comparisons.
Normalization name (type - string)
Name of the normalization.
Plot style (type - array)
Style of the generated figures.
Colormap (type - string)
Colormap to use for the image.
DPI (type - integer)
DPI of the image.
Dependencies (other tasks that this task might depend on)
| Depends on | Required/Optional |
|---|---|
| P: Normalization (single-dataset) | optional |
| P: Normalization (multi-dataset) | optional |
| P: Normalization (merged-project) | optional |
Attributes
| Attribute | Value | Description |
|---|---|---|
| Multiple allowed | True | Allow multiple instances of this task in a workflow. |
| Task can fail | False | Task is optional and can fail without causing the entire workflow to fail. |
| Step can fail | True | Sub-tasks of this task can fail without causing the entire task (and workflow) to fail. |
| Requires ion mobility | False | Task requires ion mobility data. |
| Task can fail (with ion mobility) | False | This task uses ion mobility data but it is allowed to fail, without causing the entire workflow to fail. |
| Allowed in reference dataset | True | Task is to be performed on a 'reference' dataset. This will allow for multiple analyses to be performed on the same dataset, without cluttering or duplicating certain tasks (unused at the moment). |